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        <a href="octant-module.html">Package&nbsp;octant</a> ::
        Module&nbsp;getm
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<h1 class="epydoc">Source Code for <a href="octant.getm-module.html">Module octant.getm</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno">  1</tt>  <tt class="py-line"><tt class="py-comment"># encoding: utf-8</tt> </tt>
<a name="L2"></a><tt class="py-lineno">  2</tt>  <tt class="py-line"><tt class="py-comment"></tt><tt class="py-docstring">"""</tt> </tt>
<a name="L3"></a><tt class="py-lineno">  3</tt>  <tt class="py-line"><tt class="py-docstring">octant/getm - octant tools for GETM</tt> </tt>
<a name="L4"></a><tt class="py-lineno">  4</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L5"></a><tt class="py-lineno">  5</tt>  <tt class="py-line"><tt class="py-docstring">The getm module includes some very specific tools</tt> </tt>
<a name="L6"></a><tt class="py-lineno">  6</tt>  <tt class="py-line"><tt class="py-docstring">for the General Estuarine Transport Model (www.getm.eu).</tt> </tt>
<a name="L7"></a><tt class="py-lineno">  7</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L8"></a><tt class="py-lineno">  8</tt>  <tt class="py-line"><tt class="py-docstring">Included classes:</tt> </tt>
<a name="L9"></a><tt class="py-lineno">  9</tt>  <tt class="py-line"><tt class="py-docstring">=================</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt>  <tt class="py-line"><tt class="py-docstring">Bdyinfo - handle for a bdyinfo file object</tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt>  <tt class="py-line"><tt class="py-docstring">Bdy2d - handle for creating and filling of a bdy_2d.nc file</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt>  <tt class="py-line"><tt class="py-docstring">Bdy3d - handle for creating and filling of a bdy_3d.nc file</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt>  <tt class="py-line"><tt class="py-docstring">Dependencies:</tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt>  <tt class="py-line"><tt class="py-docstring">=============</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt>  <tt class="py-line"><tt class="py-docstring">netCDF4 (as it is now, the only included netCDF library)</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt>  <tt class="py-line"><tt class="py-docstring">numpy</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt>  <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt>  <tt class="py-line"><tt class="py-name">__docformat__</tt> <tt class="py-op">=</tt> <tt class="py-string">"restructuredtext en"</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt>  <tt class="py-line"> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> <tt class="py-keyword">as</tt> <tt class="py-name">np</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">netCDF4</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package octant=octant-module.html"><a title="octant" class="py-name" href="#" onclick="return doclink('link-0', 'octant', 'link-0');">octant</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Module octant.tools=octant.tools-module.html"><a title="octant.tools" class="py-name" href="#" onclick="return doclink('link-1', 'tools', 'link-1');">tools</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Class octant.tools.Transect_extrapolator=octant.tools.Transect_extrapolator-class.html"><a title="octant.tools.Transect_extrapolator" class="py-name" href="#" onclick="return doclink('link-2', 'Transect_extrapolator', 'link-2');">Transect_extrapolator</a></tt><tt class="py-op">,</tt><tt id="link-3" class="py-name" targets="Function octant.tools.shrink()=octant.tools-module.html#shrink"><a title="octant.tools.shrink" class="py-name" href="#" onclick="return doclink('link-3', 'shrink', 'link-3');">shrink</a></tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">pylab</tt> <tt class="py-keyword">as</tt> <tt class="py-name">pl</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt>  <tt class="py-line"> </tt>
<a name="Bdyinfo"></a><div id="Bdyinfo-def"><a name="L27"></a><tt class="py-lineno"> 27</tt> <a class="py-toggle" href="#" id="Bdyinfo-toggle" onclick="return toggle('Bdyinfo');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="octant.getm.Bdyinfo-class.html">Bdyinfo</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdyinfo-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Bdyinfo-expanded"><a name="L28"></a><tt class="py-lineno"> 28</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt>  <tt class="py-line"><tt class="py-docstring">    Bdyinfo(filename): handle for GETM bdyinfo file/definition</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt>  <tt class="py-line"><tt class="py-docstring">    The Bdyinfo returns an object connected to a</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt>  <tt class="py-line"><tt class="py-docstring">    GETM bdyinfo file (usually bdyinfo.dat). It basically</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt>  <tt class="py-line"><tt class="py-docstring">    reads in the bdyinfo file specified with the filename</tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt>  <tt class="py-line"><tt class="py-docstring">    and knows the list of indices in the right order for</tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt>  <tt class="py-line"><tt class="py-docstring">    reading/writing Grids and Datasets</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt>  <tt class="py-line"> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt>  <tt class="py-line"> </tt>
<a name="Bdyinfo.__init__"></a><div id="Bdyinfo.__init__-def"><a name="L39"></a><tt class="py-lineno"> 39</tt> <a class="py-toggle" href="#" id="Bdyinfo.__init__-toggle" onclick="return toggle('Bdyinfo.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdyinfo-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">filename</tt><tt class="py-op">=</tt><tt class="py-string">'bdyinfo.dat'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdyinfo.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdyinfo.__init__-expanded"><a name="L40"></a><tt class="py-lineno"> 40</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt>  <tt class="py-line"><tt class="py-docstring">        read the GETM bdyinfo file</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt>  <tt class="py-line"> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt>  <tt class="py-line">        <tt class="py-name">bdy</tt><tt class="py-op">=</tt><tt class="py-name">open</tt><tt class="py-op">(</tt><tt id="link-4" class="py-name" targets="Variable octant.getm.Bdyinfo.filename=octant.getm.Bdyinfo-class.html#filename"><a title="octant.getm.Bdyinfo.filename" class="py-name" href="#" onclick="return doclink('link-4', 'filename', 'link-4');">filename</a></tt><tt class="py-op">)</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_filename</tt><tt class="py-op">=</tt><tt id="link-5" class="py-name"><a title="octant.getm.Bdyinfo.filename" class="py-name" href="#" onclick="return doclink('link-5', 'filename', 'link-4');">filename</a></tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt>  <tt class="py-line">        <tt id="link-6" class="py-name" targets="Variable octant.getm.Bdyinfo.indlist=octant.getm.Bdyinfo-class.html#indlist"><a title="octant.getm.Bdyinfo.indlist" class="py-name" href="#" onclick="return doclink('link-6', 'indlist', 'link-6');">indlist</a></tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt>  <tt class="py-line"> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt>  <tt class="py-line">        <tt class="py-keyword">for</tt> <tt class="py-name">d</tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt>  <tt class="py-line">          <tt class="py-name">line</tt><tt class="py-op">=</tt><tt class="py-name">bdy</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt>  <tt class="py-line">          <tt class="py-keyword">for</tt> <tt id="link-7" class="py-name" targets="Variable octant.getm.Bdy2d.nbdy=octant.getm.Bdy2d-class.html#nbdy,Variable octant.getm.Bdy3d.nbdy=octant.getm.Bdy3d-class.html#nbdy"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-7', 'nbdy', 'link-7');">nbdy</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt>  <tt class="py-line">              <tt class="py-name">specs</tt><tt class="py-op">=</tt><tt class="py-name">bdy</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt>  <tt class="py-line">              <tt class="py-name">spec</tt><tt class="py-op">=</tt><tt class="py-name">specs</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Method octant.extern.kdtree.Rectangle.split()=octant.extern.kdtree.Rectangle-class.html#split"><a title="octant.extern.kdtree.Rectangle.split" class="py-name" href="#" onclick="return doclink('link-8', 'split', 'link-8');">split</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt>  <tt class="py-line">              <tt class="py-keyword">if</tt> <tt class="py-name">d</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> <tt class="py-comment"># western boundary</tt> </tt>
<a name="L54"></a><tt class="py-lineno"> 54</tt>  <tt class="py-line">                  <tt class="py-name">start</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L55"></a><tt class="py-lineno"> 55</tt>  <tt class="py-line">                  <tt class="py-name">end</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt>  <tt class="py-line">                  <tt class="py-name">j</tt><tt class="py-op">=</tt><tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">start</tt><tt class="py-op">,</tt><tt class="py-name">end</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt>  <tt class="py-line">                  <tt class="py-name">i</tt><tt class="py-op">=</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">*</tt><tt class="py-name">np</tt><tt class="py-op">.</tt><tt class="py-name">ones</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">end</tt><tt class="py-op">-</tt><tt class="py-name">start</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">'i'</tt><tt class="py-op">)</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt>  <tt class="py-line">                  <tt id="link-9" class="py-name"><a title="octant.getm.Bdyinfo.indlist" class="py-name" href="#" onclick="return doclink('link-9', 'indlist', 'link-6');">indlist</a></tt><tt class="py-op">.</tt><tt class="py-name">extend</tt><tt class="py-op">(</tt><tt class="py-name">zip</tt><tt class="py-op">(</tt><tt class="py-name">i</tt><tt class="py-op">,</tt><tt class="py-name">j</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt>  <tt class="py-line">              <tt class="py-keyword">elif</tt> <tt class="py-name">d</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> <tt class="py-comment">#northern boundary</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt>  <tt class="py-line">                  <tt class="py-name">start</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt>  <tt class="py-line">                  <tt class="py-name">end</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt>  <tt class="py-line">                  <tt class="py-name">i</tt><tt class="py-op">=</tt><tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">start</tt><tt class="py-op">,</tt><tt class="py-name">end</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt>  <tt class="py-line">                  <tt class="py-name">j</tt><tt class="py-op">=</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">*</tt><tt class="py-name">np</tt><tt class="py-op">.</tt><tt class="py-name">ones</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">end</tt><tt class="py-op">-</tt><tt class="py-name">start</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">'i'</tt><tt class="py-op">)</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt>  <tt class="py-line">                  <tt id="link-10" class="py-name"><a title="octant.getm.Bdyinfo.indlist" class="py-name" href="#" onclick="return doclink('link-10', 'indlist', 'link-6');">indlist</a></tt><tt class="py-op">.</tt><tt class="py-name">extend</tt><tt class="py-op">(</tt><tt class="py-name">zip</tt><tt class="py-op">(</tt><tt class="py-name">i</tt><tt class="py-op">,</tt><tt class="py-name">j</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt>  <tt class="py-line">              <tt class="py-keyword">elif</tt> <tt class="py-name">d</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> <tt class="py-comment">#eastern boundary</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt>  <tt class="py-line">                  <tt class="py-name">start</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt>  <tt class="py-line">                  <tt class="py-name">end</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt>  <tt class="py-line">                  <tt class="py-name">j</tt><tt class="py-op">=</tt><tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">start</tt><tt class="py-op">,</tt><tt class="py-name">end</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt>  <tt class="py-line">                  <tt class="py-name">i</tt><tt class="py-op">=</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">*</tt><tt class="py-name">np</tt><tt class="py-op">.</tt><tt class="py-name">ones</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">end</tt><tt class="py-op">-</tt><tt class="py-name">start</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">'i'</tt><tt class="py-op">)</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt>  <tt class="py-line">                  <tt id="link-11" class="py-name"><a title="octant.getm.Bdyinfo.indlist" class="py-name" href="#" onclick="return doclink('link-11', 'indlist', 'link-6');">indlist</a></tt><tt class="py-op">.</tt><tt class="py-name">extend</tt><tt class="py-op">(</tt><tt class="py-name">zip</tt><tt class="py-op">(</tt><tt class="py-name">i</tt><tt class="py-op">,</tt><tt class="py-name">j</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt>  <tt class="py-line">              <tt class="py-keyword">elif</tt> <tt class="py-name">d</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> <tt class="py-comment">#southern boundary</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt>  <tt class="py-line">                  <tt class="py-name">start</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt>  <tt class="py-line">                  <tt class="py-name">end</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt>  <tt class="py-line">                  <tt class="py-name">j</tt><tt class="py-op">=</tt><tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">start</tt><tt class="py-op">,</tt><tt class="py-name">end</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt>  <tt class="py-line">                  <tt class="py-name">i</tt><tt class="py-op">=</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">spec</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">*</tt><tt class="py-name">np</tt><tt class="py-op">.</tt><tt class="py-name">ones</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">end</tt><tt class="py-op">-</tt><tt class="py-name">start</tt><tt class="py-op">+</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">'i'</tt><tt class="py-op">)</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt>  <tt class="py-line">                  <tt id="link-12" class="py-name"><a title="octant.getm.Bdyinfo.indlist" class="py-name" href="#" onclick="return doclink('link-12', 'indlist', 'link-6');">indlist</a></tt><tt class="py-op">.</tt><tt class="py-name">extend</tt><tt class="py-op">(</tt><tt class="py-name">zip</tt><tt class="py-op">(</tt><tt class="py-name">i</tt><tt class="py-op">,</tt><tt class="py-name">j</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt>  <tt class="py-line">         </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt>  <tt class="py-line">        <tt class="py-name">bdy</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Method octant.extern.pupynere.NetCDFFile.close()=octant.extern.pupynere.NetCDFFile-class.html#close,Method octant.getm.Bdy2d.close()=octant.getm.Bdy2d-class.html#close,Method octant.getm.Bdy3d.close()=octant.getm.Bdy3d-class.html#close"><a title="octant.extern.pupynere.NetCDFFile.close
octant.getm.Bdy2d.close
octant.getm.Bdy3d.close" class="py-name" href="#" onclick="return doclink('link-13', 'close', 'link-13');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_indlist</tt><tt class="py-op">=</tt><tt id="link-14" class="py-name"><a title="octant.getm.Bdyinfo.indlist" class="py-name" href="#" onclick="return doclink('link-14', 'indlist', 'link-6');">indlist</a></tt> </tt>
</div><a name="L80"></a><tt class="py-lineno"> 80</tt>  <tt class="py-line"> </tt>
<a name="Bdyinfo.get_indlist"></a><div id="Bdyinfo.get_indlist-def"><a name="L81"></a><tt class="py-lineno"> 81</tt> <a class="py-toggle" href="#" id="Bdyinfo.get_indlist-toggle" onclick="return toggle('Bdyinfo.get_indlist');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdyinfo-class.html#get_indlist">get_indlist</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdyinfo.get_indlist-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdyinfo.get_indlist-expanded"><a name="L82"></a><tt class="py-lineno"> 82</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_indlist</tt> </tt>
</div><a name="L83"></a><tt class="py-lineno"> 83</tt>  <tt class="py-line"> </tt>
<a name="Bdyinfo.get_filename"></a><div id="Bdyinfo.get_filename-def"><a name="L84"></a><tt class="py-lineno"> 84</tt> <a class="py-toggle" href="#" id="Bdyinfo.get_filename-toggle" onclick="return toggle('Bdyinfo.get_filename');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdyinfo-class.html#get_filename">get_filename</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdyinfo.get_filename-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdyinfo.get_filename-expanded"><a name="L85"></a><tt class="py-lineno"> 85</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_filename</tt> </tt>
</div><a name="L86"></a><tt class="py-lineno"> 86</tt>  <tt class="py-line"> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt>  <tt class="py-line">    <tt id="link-15" class="py-name"><a title="octant.getm.Bdyinfo.indlist" class="py-name" href="#" onclick="return doclink('link-15', 'indlist', 'link-6');">indlist</a></tt><tt class="py-op">=</tt><tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-16" class="py-name" targets="Method octant.getm.Bdyinfo.get_indlist()=octant.getm.Bdyinfo-class.html#get_indlist"><a title="octant.getm.Bdyinfo.get_indlist" class="py-name" href="#" onclick="return doclink('link-16', 'get_indlist', 'link-16');">get_indlist</a></tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> \ </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt>  <tt class="py-line">            <tt class="py-name">doc</tt><tt class="py-op">=</tt><tt class="py-string">"list of indices in the GETM bdyinfo file"</tt><tt class="py-op">)</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt>  <tt class="py-line">    <tt id="link-17" class="py-name"><a title="octant.getm.Bdyinfo.filename" class="py-name" href="#" onclick="return doclink('link-17', 'filename', 'link-4');">filename</a></tt><tt class="py-op">=</tt><tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-18" class="py-name" targets="Method octant.getm.Bdyinfo.get_filename()=octant.getm.Bdyinfo-class.html#get_filename"><a title="octant.getm.Bdyinfo.get_filename" class="py-name" href="#" onclick="return doclink('link-18', 'get_filename', 'link-18');">get_filename</a></tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> \ </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt>  <tt class="py-line">            <tt class="py-name">doc</tt><tt class="py-op">=</tt><tt class="py-string">"file name of GETM bdyinfo file"</tt><tt class="py-op">)</tt> </tt>
</div><a name="L91"></a><tt class="py-lineno"> 91</tt>  <tt class="py-line"> </tt>
<a name="Bdy2d"></a><div id="Bdy2d-def"><a name="L92"></a><tt class="py-lineno"> 92</tt> <a class="py-toggle" href="#" id="Bdy2d-toggle" onclick="return toggle('Bdy2d');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="octant.getm.Bdy2d-class.html">Bdy2d</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy2d-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Bdy2d-expanded"><a name="L93"></a><tt class="py-lineno"> 93</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt>  <tt class="py-line"><tt class="py-docstring">    Bdy2d(filename) GETM 2D boundary file class</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt>  <tt class="py-line"> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt>  <tt class="py-line">    <tt id="link-19" class="py-name" targets="Variable octant.getm.Bdy2d._tname=octant.getm.Bdy2d-class.html#_tname,Variable octant.getm.Bdy3d._tname=octant.getm.Bdy3d-class.html#_tname"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-19', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">=</tt><tt class="py-string">'time'</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt>  <tt class="py-line">    <tt id="link-20" class="py-name" targets="Variable octant.getm.Bdy2d._nbdyname=octant.getm.Bdy2d-class.html#_nbdyname,Variable octant.getm.Bdy3d._nbdyname=octant.getm.Bdy3d-class.html#_nbdyname"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-20', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">=</tt><tt class="py-string">'nbdyp'</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt>  <tt class="py-line">    <tt id="link-21" class="py-name" targets="Variable octant.getm.Bdy2d._eunits=octant.getm.Bdy2d-class.html#_eunits,Variable octant.getm.Bdy3d._eunits=octant.getm.Bdy3d-class.html#_eunits"><a title="octant.getm.Bdy2d._eunits
octant.getm.Bdy3d._eunits" class="py-name" href="#" onclick="return doclink('link-21', '_eunits', 'link-21');">_eunits</a></tt><tt class="py-op">=</tt><tt class="py-string">'m'</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt>  <tt class="py-line">    <tt id="link-22" class="py-name" targets="Variable octant.getm.Bdy2d._ename=octant.getm.Bdy2d-class.html#_ename"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-22', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">=</tt><tt class="py-string">'elev'</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt>  <tt class="py-line"> </tt>
<a name="Bdy2d.__init__"></a><div id="Bdy2d.__init__-def"><a name="L102"></a><tt class="py-lineno">102</tt> <a class="py-toggle" href="#" id="Bdy2d.__init__-toggle" onclick="return toggle('Bdy2d.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy2d-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">filename</tt><tt class="py-op">=</tt><tt class="py-string">'bdy_2d.nc'</tt><tt class="py-op">,</tt><tt class="py-param">mode</tt><tt class="py-op">=</tt><tt class="py-string">'r'</tt><tt class="py-op">,</tt><tt class="py-param">timeunits</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-param">nbdy</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-param">updatefields</tt><tt class="py-op">=</tt><tt class="py-name">False</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy2d.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy2d.__init__-expanded"><a name="L103"></a><tt class="py-lineno">103</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt>  <tt class="py-line"><tt class="py-docstring">        open GETM bdy2d file</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt>  <tt class="py-line"><tt class="py-docstring">        filename - the GETM bdy3d netcdf file name string</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt>  <tt class="py-line"><tt class="py-docstring">        mode - 'r' for read-only, 'r+' or 'a' for append, 'w' for create or overwrite</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt>  <tt class="py-line"><tt class="py-docstring">        timeunits - CF units string of time variable</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt>  <tt class="py-line"><tt class="py-docstring">        nbdy - number of boundary points</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt>  <tt class="py-line"><tt class="py-docstring">        updatefields - boolean; should ncdf fields be updated in the python workspace? </tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt>  <tt class="py-line"> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_filename</tt><tt class="py-op">=</tt><tt id="link-23" class="py-name"><a title="octant.getm.Bdyinfo.filename" class="py-name" href="#" onclick="return doclink('link-23', 'filename', 'link-4');">filename</a></tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_filemode</tt><tt class="py-op">=</tt><tt class="py-name">mode</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_updatefields</tt><tt class="py-op">=</tt><tt class="py-name">updatefields</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt>  <tt class="py-line"> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">=</tt><tt class="py-name">netCDF4</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name" targets="Function octant.io.Dataset()=octant.io-module.html#Dataset"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-24', 'Dataset', 'link-24');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_filename</tt><tt class="py-op">,</tt><tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-name">mode</tt><tt class="py-op">,</tt><tt class="py-name">format</tt><tt class="py-op">=</tt><tt class="py-string">'NETCDF3_CLASSIC'</tt><tt class="py-op">)</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt>  <tt class="py-line"> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">mode</tt><tt class="py-op">==</tt><tt class="py-string">'r'</tt> <tt class="py-keyword">or</tt> <tt class="py-name">mode</tt> <tt class="py-op">==</tt> <tt class="py-string">'r+'</tt> <tt class="py-keyword">or</tt> <tt class="py-name">mode</tt><tt class="py-op">==</tt><tt class="py-string">'a'</tt><tt class="py-op">:</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt><tt class="py-op">=</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">dimensions</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-25', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">=</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">dimensions</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-26', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">elev</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-27', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Class octant.cf.time=octant.cf.time-class.html,Module octant.ocean.time=octant.ocean.time-module.html,Class octant.ocean.time.time=octant.ocean.time.time-class.html"><a title="octant.cf.time
octant.ocean.time
octant.ocean.time.time" class="py-name" href="#" onclick="return doclink('link-28', 'time', 'link-28');">time</a></tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-29', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">timeunits</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-30', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">elevunits</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-31', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">mode</tt> <tt class="py-op">==</tt><tt class="py-string">'w'</tt><tt class="py-op">:</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-32', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-33', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-string">'f8'</tt><tt class="py-op">,</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-34', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">timeunits</tt><tt class="py-op">!=</tt><tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-35', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt><tt class="py-op">=</tt><tt class="py-name">timeunits</tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_timeunits</tt><tt class="py-op">=</tt><tt class="py-name">timeunits</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt><tt class="py-op">=</tt><tt class="py-number">0</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">=</tt><tt id="link-36" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-36', 'nbdy', 'link-7');">nbdy</a></tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt id="link-37" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-37', 'nbdy', 'link-7');">nbdy</a></tt><tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-38', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">,</tt><tt id="link-39" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-39', 'nbdy', 'link-7');">nbdy</a></tt><tt class="py-op">)</tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-40', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">,</tt><tt class="py-string">'f8'</tt><tt class="py-op">,</tt>\ </tt>
<a name="L137"></a><tt class="py-lineno">137</tt>  <tt class="py-line">                        <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-41', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-42', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-43', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="octant.getm.Bdy2d._eunits
octant.getm.Bdy3d._eunits" class="py-name" href="#" onclick="return doclink('link-44', '_eunits', 'link-21');">_eunits</a></tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">sync</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L140"></a><tt class="py-lineno">140</tt>  <tt class="py-line"> </tt>
<a name="Bdy2d.close"></a><div id="Bdy2d.close-def"><a name="L141"></a><tt class="py-lineno">141</tt> <a class="py-toggle" href="#" id="Bdy2d.close-toggle" onclick="return toggle('Bdy2d.close');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy2d-class.html#close">close</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy2d.close-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy2d.close-expanded"><a name="L142"></a><tt class="py-lineno">142</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt>  <tt class="py-line"><tt class="py-docstring">        close GETM bdy2d file</tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="octant.extern.pupynere.NetCDFFile.close
octant.getm.Bdy2d.close
octant.getm.Bdy3d.close" class="py-name" href="#" onclick="return doclink('link-45', 'close', 'link-13');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L146"></a><tt class="py-lineno">146</tt>  <tt class="py-line"> </tt>
<a name="Bdy2d.putdata"></a><div id="Bdy2d.putdata-def"><a name="L147"></a><tt class="py-lineno">147</tt> <a class="py-toggle" href="#" id="Bdy2d.putdata-toggle" onclick="return toggle('Bdy2d.putdata');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy2d-class.html#putdata">putdata</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">time</tt><tt class="py-op">,</tt><tt class="py-param">data</tt><tt class="py-op">,</tt><tt class="py-param">tind</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy2d.putdata-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy2d.putdata-expanded"><a name="L148"></a><tt class="py-lineno">148</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt>  <tt class="py-line"><tt class="py-docstring">        put elevation data for one timestep</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt>  <tt class="py-line"><tt class="py-docstring">        into GETM bdy2d file. time has to be a float number,</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt>  <tt class="py-line"><tt class="py-docstring">        data has to be a 1D float list or array.</tt> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt>  <tt class="py-line"> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt>  <tt class="py-line">        <tt class="py-name">data</tt><tt class="py-op">=</tt><tt class="py-name">np</tt><tt class="py-op">.</tt><tt class="py-name">asarray</tt><tt class="py-op">(</tt><tt class="py-name">data</tt><tt class="py-op">)</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt>  <tt class="py-line">        <tt class="py-name">nmax</tt><tt class="py-op">=</tt><tt class="py-name">data</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">=</tt><tt class="py-name">nmax</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-46', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">,</tt><tt class="py-string">'i'</tt><tt class="py-op">)</tt> </tt>
<a name="L159"></a><tt class="py-lineno">159</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-47', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">,</tt><tt class="py-string">'f8'</tt><tt class="py-op">,</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-48', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-49', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variable</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-50', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="octant.getm.Bdy2d._eunits
octant.getm.Bdy3d._eunits" class="py-name" href="#" onclick="return doclink('link-51', '_eunits', 'link-21');">_eunits</a></tt> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt>  <tt class="py-line"> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">nmax</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">:</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">tind</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt>  <tt class="py-line">                <tt class="py-name">tind</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-52" class="py-name" targets="Variable octant.getm.Bdy2d.tnum=octant.getm.Bdy2d-class.html#tnum,Variable octant.getm.Bdy3d.tnum=octant.getm.Bdy3d-class.html#tnum"><a title="octant.getm.Bdy2d.tnum
octant.getm.Bdy3d.tnum" class="py-name" href="#" onclick="return doclink('link-52', 'tnum', 'link-52');">tnum</a></tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-53', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tind</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt class="py-name">data</tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-54', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tind</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt id="link-55" class="py-name"><a title="octant.cf.time
octant.ocean.time
octant.ocean.time.time" class="py-name" href="#" onclick="return doclink('link-55', 'time', 'link-28');">time</a></tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt><tt class="py-op">+=</tt><tt class="py-number">1</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">sync</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt>  <tt class="py-line"> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_updatefields</tt><tt class="py-op">:</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">elev</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="octant.getm.Bdy2d._ename" class="py-name" href="#" onclick="return doclink('link-56', '_ename', 'link-22');">_ename</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="octant.cf.time
octant.ocean.time
octant.ocean.time.time" class="py-name" href="#" onclick="return doclink('link-57', 'time', 'link-28');">time</a></tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-58', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"ERROR: length of data has to fit nbdy = "</tt><tt class="py-op">,</tt><tt class="py-name">self_nbdy</tt> </tt>
</div><a name="L175"></a><tt class="py-lineno">175</tt>  <tt class="py-line">         </tt>
<a name="Bdy2d.get_nbdy"></a><div id="Bdy2d.get_nbdy-def"><a name="L176"></a><tt class="py-lineno">176</tt> <a class="py-toggle" href="#" id="Bdy2d.get_nbdy-toggle" onclick="return toggle('Bdy2d.get_nbdy');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy2d-class.html#get_nbdy">get_nbdy</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy2d.get_nbdy-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy2d.get_nbdy-expanded"><a name="L177"></a><tt class="py-lineno">177</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt> </tt>
</div><a name="Bdy2d.get_tnum"></a><div id="Bdy2d.get_tnum-def"><a name="L178"></a><tt class="py-lineno">178</tt> <a class="py-toggle" href="#" id="Bdy2d.get_tnum-toggle" onclick="return toggle('Bdy2d.get_tnum');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy2d-class.html#get_tnum">get_tnum</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy2d.get_tnum-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy2d.get_tnum-expanded"><a name="L179"></a><tt class="py-lineno">179</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt> </tt>
</div><a name="L180"></a><tt class="py-lineno">180</tt>  <tt class="py-line"> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt>  <tt class="py-line">    <tt id="link-59" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-59', 'nbdy', 'link-7');">nbdy</a></tt><tt class="py-op">=</tt><tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-60" class="py-name" targets="Method octant.getm.Bdy2d.get_nbdy()=octant.getm.Bdy2d-class.html#get_nbdy,Method octant.getm.Bdy3d.get_nbdy()=octant.getm.Bdy3d-class.html#get_nbdy"><a title="octant.getm.Bdy2d.get_nbdy
octant.getm.Bdy3d.get_nbdy" class="py-name" href="#" onclick="return doclink('link-60', 'get_nbdy', 'link-60');">get_nbdy</a></tt><tt class="py-op">,</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-name">doc</tt><tt class="py-op">=</tt><tt class="py-string">"Number of boundary steps"</tt><tt class="py-op">)</tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt>  <tt class="py-line">    <tt id="link-61" class="py-name"><a title="octant.getm.Bdy2d.tnum
octant.getm.Bdy3d.tnum" class="py-name" href="#" onclick="return doclink('link-61', 'tnum', 'link-52');">tnum</a></tt><tt class="py-op">=</tt><tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-62" class="py-name" targets="Method octant.getm.Bdy2d.get_tnum()=octant.getm.Bdy2d-class.html#get_tnum,Method octant.getm.Bdy3d.get_tnum()=octant.getm.Bdy3d-class.html#get_tnum"><a title="octant.getm.Bdy2d.get_tnum
octant.getm.Bdy3d.get_tnum" class="py-name" href="#" onclick="return doclink('link-62', 'get_tnum', 'link-62');">get_tnum</a></tt><tt class="py-op">,</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-name">doc</tt><tt class="py-op">=</tt><tt class="py-string">"Number of timesteps"</tt><tt class="py-op">)</tt> </tt>
</div><a name="L183"></a><tt class="py-lineno">183</tt>  <tt class="py-line"> </tt>
<a name="Bdy3d"></a><div id="Bdy3d-def"><a name="L184"></a><tt class="py-lineno">184</tt> <a class="py-toggle" href="#" id="Bdy3d-toggle" onclick="return toggle('Bdy3d');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="octant.getm.Bdy3d-class.html">Bdy3d</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy3d-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Bdy3d-expanded"><a name="L185"></a><tt class="py-lineno">185</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt>  <tt class="py-line"><tt class="py-docstring">    Bdy3d(filename) GETM 3D boundary file class</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt>  <tt class="py-line"> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt>  <tt class="py-line">    <tt id="link-63" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-63', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">=</tt><tt class="py-string">'time'</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt>  <tt class="py-line">    <tt id="link-64" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-64', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">=</tt><tt class="py-string">'nbdyp'</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt>  <tt class="py-line">    <tt id="link-65" class="py-name"><a title="octant.getm.Bdy2d._eunits
octant.getm.Bdy3d._eunits" class="py-name" href="#" onclick="return doclink('link-65', '_eunits', 'link-21');">_eunits</a></tt><tt class="py-op">=</tt><tt class="py-string">'m'</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt>  <tt class="py-line">    <tt id="link-66" class="py-name" targets="Variable octant.getm.Bdy3d._zname=octant.getm.Bdy3d-class.html#_zname"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-66', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">=</tt><tt class="py-string">'zax'</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt>  <tt class="py-line"> </tt>
<a name="Bdy3d.__init__"></a><div id="Bdy3d.__init__-def"><a name="L194"></a><tt class="py-lineno">194</tt> <a class="py-toggle" href="#" id="Bdy3d.__init__-toggle" onclick="return toggle('Bdy3d.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy3d-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">filename</tt><tt class="py-op">=</tt><tt class="py-string">'bdy_3d.nc'</tt><tt class="py-op">,</tt><tt class="py-param">mode</tt><tt class="py-op">=</tt><tt class="py-string">'r'</tt><tt class="py-op">,</tt><tt class="py-param">timeunits</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-param">nbdy</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-param">zax</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-param">updatefields</tt><tt class="py-op">=</tt><tt class="py-name">False</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy3d.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy3d.__init__-expanded"><a name="L195"></a><tt class="py-lineno">195</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt>  <tt class="py-line"><tt class="py-docstring">        open GETM bdy3d file</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt>  <tt class="py-line"><tt class="py-docstring">        filename - the GETM bdy3d netcdf file name string</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt>  <tt class="py-line"><tt class="py-docstring">        mode - 'r' for read-only, 'r+' or 'a' for append, 'w' for create or overwrite</tt> </tt>
<a name="L200"></a><tt class="py-lineno">200</tt>  <tt class="py-line"><tt class="py-docstring">        timeunits - CF units string of time variable</tt> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt>  <tt class="py-line"><tt class="py-docstring">        nbdy - number of boundary points</tt> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt>  <tt class="py-line"><tt class="py-docstring">        zax - vector of z-levels (positive, increasing depths)</tt> </tt>
<a name="L203"></a><tt class="py-lineno">203</tt>  <tt class="py-line"><tt class="py-docstring">        updatefields - boolean; should ncdf fields be updated in the python workspace? </tt> </tt>
<a name="L204"></a><tt class="py-lineno">204</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L205"></a><tt class="py-lineno">205</tt>  <tt class="py-line"> </tt>
<a name="L206"></a><tt class="py-lineno">206</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_filename</tt><tt class="py-op">=</tt><tt id="link-67" class="py-name"><a title="octant.getm.Bdyinfo.filename" class="py-name" href="#" onclick="return doclink('link-67', 'filename', 'link-4');">filename</a></tt> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_filemode</tt><tt class="py-op">=</tt><tt class="py-name">mode</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_updatefields</tt><tt class="py-op">=</tt><tt class="py-name">updatefields</tt> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt>  <tt class="py-line"> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">=</tt><tt class="py-name">netCDF4</tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-68', 'Dataset', 'link-24');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_filename</tt><tt class="py-op">,</tt><tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-name">mode</tt><tt class="py-op">,</tt><tt class="py-name">format</tt><tt class="py-op">=</tt><tt class="py-string">'NETCDF3_CLASSIC'</tt><tt class="py-op">)</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt>  <tt class="py-line"> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">mode</tt><tt class="py-op">==</tt><tt class="py-string">'r'</tt> <tt class="py-keyword">or</tt> <tt class="py-name">mode</tt> <tt class="py-op">==</tt> <tt class="py-string">'r+'</tt> <tt class="py-keyword">or</tt> <tt class="py-name">mode</tt><tt class="py-op">==</tt><tt class="py-string">'a'</tt><tt class="py-op">:</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt><tt class="py-op">=</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">dimensions</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-69', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">=</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">dimensions</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-70', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L215"></a><tt class="py-lineno">215</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_znum</tt><tt class="py-op">=</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">dimensions</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-71" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-71', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="octant.cf.time
octant.ocean.time
octant.ocean.time.time" class="py-name" href="#" onclick="return doclink('link-72', 'time', 'link-28');">time</a></tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-73', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">zax</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-74', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L218"></a><tt class="py-lineno">218</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">timeunits</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-75', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">zaxunits</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-76', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">mode</tt> <tt class="py-op">==</tt><tt class="py-string">'w'</tt><tt class="py-op">:</tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-77', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-78', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-string">'f8'</tt><tt class="py-op">,</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-79', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">timeunits</tt><tt class="py-op">!=</tt><tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L224"></a><tt class="py-lineno">224</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-80', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">units</tt><tt class="py-op">=</tt><tt class="py-name">timeunits</tt> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_timeunits</tt><tt class="py-op">=</tt><tt class="py-name">timeunits</tt> </tt>
<a name="L226"></a><tt class="py-lineno">226</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt><tt class="py-op">=</tt><tt class="py-number">0</tt> </tt>
<a name="L227"></a><tt class="py-lineno">227</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">=</tt><tt id="link-81" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-81', 'nbdy', 'link-7');">nbdy</a></tt> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">zax</tt><tt class="py-op">==</tt><tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L229"></a><tt class="py-lineno">229</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"you have to specify a zax vector!"</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt>  <tt class="py-line">            <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-82', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">,</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">zax</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L232"></a><tt class="py-lineno">232</tt>  <tt class="py-line">                <tt class="py-name">zvar</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-83', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">,</tt><tt class="py-string">'f8'</tt><tt class="py-op">,</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-84', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L233"></a><tt class="py-lineno">233</tt>  <tt class="py-line">                <tt class="py-name">zvar</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt class="py-name">zax</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">zax</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-85', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_znum</tt><tt class="py-op">=</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">zax</tt><tt class="py-op">)</tt> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt id="link-86" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-86', 'nbdy', 'link-7');">nbdy</a></tt><tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-87', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">,</tt><tt id="link-88" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-88', 'nbdy', 'link-7');">nbdy</a></tt><tt class="py-op">)</tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">=</tt><tt id="link-89" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-89', 'nbdy', 'link-7');">nbdy</a></tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">sync</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L240"></a><tt class="py-lineno">240</tt>  <tt class="py-line"> </tt>
<a name="Bdy3d.close"></a><div id="Bdy3d.close-def"><a name="L241"></a><tt class="py-lineno">241</tt> <a class="py-toggle" href="#" id="Bdy3d.close-toggle" onclick="return toggle('Bdy3d.close');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy3d-class.html#close">close</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy3d.close-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy3d.close-expanded"><a name="L242"></a><tt class="py-lineno">242</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt>  <tt class="py-line"><tt class="py-docstring">        close GETM bdy3d file</tt> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="octant.extern.pupynere.NetCDFFile.close
octant.getm.Bdy2d.close
octant.getm.Bdy3d.close" class="py-name" href="#" onclick="return doclink('link-90', 'close', 'link-13');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L246"></a><tt class="py-lineno">246</tt>  <tt class="py-line"> </tt>
<a name="Bdy3d.addvar"></a><div id="Bdy3d.addvar-def"><a name="L247"></a><tt class="py-lineno">247</tt> <a class="py-toggle" href="#" id="Bdy3d.addvar-toggle" onclick="return toggle('Bdy3d.addvar');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy3d-class.html#addvar">addvar</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">var</tt><tt class="py-op">,</tt><tt class="py-param">units</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-param">const</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy3d.addvar-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy3d.addvar-expanded"><a name="L248"></a><tt class="py-lineno">248</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt>  <tt class="py-line"><tt class="py-docstring">        add variable to GETM bdy3d file</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L251"></a><tt class="py-lineno">251</tt>  <tt class="py-line"><tt class="py-docstring">        var - variable name string</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt>  <tt class="py-line"><tt class="py-docstring">        units - CF units string</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt>  <tt class="py-line"><tt class="py-docstring">        const - has to be a float value. If set, then the data-array is filled with const</tt> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L255"></a><tt class="py-lineno">255</tt>  <tt class="py-line">        <tt class="py-name">varvar</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createVariable</tt><tt class="py-op">(</tt><tt class="py-name">var</tt><tt class="py-op">,</tt><tt class="py-string">'f8'</tt><tt class="py-op">,</tt> \ </tt>
<a name="L256"></a><tt class="py-lineno">256</tt>  <tt class="py-line">                <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-91" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-91', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-92', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-93', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt>  <tt class="py-line">        <tt class="py-name">varvar</tt><tt class="py-op">.</tt><tt class="py-name">units</tt><tt class="py-op">=</tt><tt class="py-name">units</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">const</tt><tt class="py-op">!=</tt><tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L259"></a><tt class="py-lineno">259</tt>  <tt class="py-line">            <tt class="py-name">varvar</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt class="py-name">np</tt><tt class="py-op">.</tt><tt class="py-name">ones</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_znum</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> \ </tt>
<a name="L260"></a><tt class="py-lineno">260</tt>  <tt class="py-line">                    <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">'f8'</tt><tt class="py-op">)</tt><tt class="py-op">*</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">const</tt><tt class="py-op">)</tt> </tt>
<a name="L261"></a><tt class="py-lineno">261</tt>  <tt class="py-line">        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">sync</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L262"></a><tt class="py-lineno">262</tt>  <tt class="py-line"> </tt>
<a name="L263"></a><tt class="py-lineno">263</tt>  <tt class="py-line"> </tt>
<a name="Bdy3d.putdata"></a><div id="Bdy3d.putdata-def"><a name="L264"></a><tt class="py-lineno">264</tt> <a class="py-toggle" href="#" id="Bdy3d.putdata-toggle" onclick="return toggle('Bdy3d.putdata');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy3d-class.html#putdata">putdata</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt><tt class="py-param">time</tt><tt class="py-op">,</tt><tt class="py-param">varname</tt><tt class="py-op">,</tt><tt class="py-param">data</tt><tt class="py-op">,</tt><tt class="py-param">tind</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy3d.putdata-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy3d.putdata-expanded"><a name="L265"></a><tt class="py-lineno">265</tt>  <tt class="py-line">        <tt class="py-docstring">"""</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt>  <tt class="py-line"><tt class="py-docstring">        put data for one timestep into GETM bdy3d file.</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt>  <tt class="py-line"><tt class="py-docstring">        </tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt>  <tt class="py-line"><tt class="py-docstring">        time - a float number in the units of variable time,</tt> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt>  <tt class="py-line"><tt class="py-docstring">        varname - the variable name string of an existing variable</tt> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt>  <tt class="py-line"><tt class="py-docstring">        data - a 2D float list or array to be put into the bdy3d file.</tt> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt>  <tt class="py-line"><tt class="py-docstring">        """</tt> </tt>
<a name="L272"></a><tt class="py-lineno">272</tt>  <tt class="py-line"> </tt>
<a name="L273"></a><tt class="py-lineno">273</tt>  <tt class="py-line">        <tt class="py-name">data</tt><tt class="py-op">=</tt><tt class="py-name">np</tt><tt class="py-op">.</tt><tt class="py-name">asarray</tt><tt class="py-op">(</tt><tt class="py-name">data</tt><tt class="py-op">)</tt> </tt>
<a name="L274"></a><tt class="py-lineno">274</tt>  <tt class="py-line">        <tt class="py-name">nmax</tt><tt class="py-op">,</tt><tt class="py-name">zmax</tt><tt class="py-op">=</tt><tt class="py-name">data</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">=</tt><tt class="py-name">nmax</tt> </tt>
<a name="L277"></a><tt class="py-lineno">277</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">createDimension</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-94" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-94', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">,</tt><tt class="py-string">'i'</tt><tt class="py-op">)</tt> </tt>
<a name="L278"></a><tt class="py-lineno">278</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name" targets="Method octant.getm.Bdy3d.addvar()=octant.getm.Bdy3d-class.html#addvar"><a title="octant.getm.Bdy3d.addvar" class="py-name" href="#" onclick="return doclink('link-95', 'addvar', 'link-95');">addvar</a></tt><tt class="py-op">(</tt><tt class="py-name">varname</tt><tt class="py-op">,</tt><tt class="py-string">'f8'</tt><tt class="py-op">,</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-96', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-97" class="py-name"><a title="octant.getm.Bdy2d._nbdyname
octant.getm.Bdy3d._nbdyname" class="py-name" href="#" onclick="return doclink('link-97', '_nbdyname', 'link-20');">_nbdyname</a></tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-98" class="py-name"><a title="octant.getm.Bdy3d._zname" class="py-name" href="#" onclick="return doclink('link-98', '_zname', 'link-66');">_zname</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L279"></a><tt class="py-lineno">279</tt>  <tt class="py-line"> </tt>
<a name="L280"></a><tt class="py-lineno">280</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">nmax</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt> <tt class="py-keyword">and</tt> <tt class="py-name">zmax</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_znum</tt><tt class="py-op">:</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">tind</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-99" class="py-name"><a title="octant.getm.Bdy2d.tnum
octant.getm.Bdy3d.tnum" class="py-name" href="#" onclick="return doclink('link-99', 'tnum', 'link-52');">tnum</a></tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt>  <tt class="py-line">                    <tt class="py-name">tind</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L284"></a><tt class="py-lineno">284</tt>  <tt class="py-line">                <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L285"></a><tt class="py-lineno">285</tt>  <tt class="py-line">                    <tt class="py-name">tind</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="octant.getm.Bdy2d.tnum
octant.getm.Bdy3d.tnum" class="py-name" href="#" onclick="return doclink('link-100', 'tnum', 'link-52');">tnum</a></tt><tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
<a name="L286"></a><tt class="py-lineno">286</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">varname</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tind</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt class="py-name">data</tt> </tt>
<a name="L287"></a><tt class="py-lineno">287</tt>  <tt class="py-line">            <tt class="py-keyword">if</tt> <tt class="py-name">tind</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-101" class="py-name"><a title="octant.getm.Bdy2d.tnum
octant.getm.Bdy3d.tnum" class="py-name" href="#" onclick="return doclink('link-101', 'tnum', 'link-52');">tnum</a></tt><tt class="py-op">:</tt> </tt>
<a name="L288"></a><tt class="py-lineno">288</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-102" class="py-name"><a title="octant.getm.Bdy2d._tname
octant.getm.Bdy3d._tname" class="py-name" href="#" onclick="return doclink('link-102', '_tname', 'link-19');">_tname</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-name">tind</tt><tt class="py-op">]</tt><tt class="py-op">=</tt><tt id="link-103" class="py-name"><a title="octant.cf.time
octant.ocean.time
octant.ocean.time.time" class="py-name" href="#" onclick="return doclink('link-103', 'time', 'link-28');">time</a></tt> </tt>
<a name="L289"></a><tt class="py-lineno">289</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt><tt class="py-op">+</tt><tt class="py-number">1</tt> </tt>
<a name="L290"></a><tt class="py-lineno">290</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ncdf</tt><tt class="py-op">.</tt><tt class="py-name">sync</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L291"></a><tt class="py-lineno">291</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L292"></a><tt class="py-lineno">292</tt>  <tt class="py-line">            <tt class="py-keyword">print</tt> <tt class="py-string">"ERROR: length of data has to fit nbdy = "</tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt><tt class="py-op">,</tt><tt class="py-string">" and znum = "</tt><tt class="py-op">,</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_znum</tt> </tt>
</div><a name="L293"></a><tt class="py-lineno">293</tt>  <tt class="py-line">         </tt>
<a name="Bdy3d.get_nbdy"></a><div id="Bdy3d.get_nbdy-def"><a name="L294"></a><tt class="py-lineno">294</tt> <a class="py-toggle" href="#" id="Bdy3d.get_nbdy-toggle" onclick="return toggle('Bdy3d.get_nbdy');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy3d-class.html#get_nbdy">get_nbdy</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy3d.get_nbdy-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy3d.get_nbdy-expanded"><a name="L295"></a><tt class="py-lineno">295</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_nbdy</tt> </tt>
</div><a name="Bdy3d.get_tnum"></a><div id="Bdy3d.get_tnum-def"><a name="L296"></a><tt class="py-lineno">296</tt> <a class="py-toggle" href="#" id="Bdy3d.get_tnum-toggle" onclick="return toggle('Bdy3d.get_tnum');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy3d-class.html#get_tnum">get_tnum</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy3d.get_tnum-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy3d.get_tnum-expanded"><a name="L297"></a><tt class="py-lineno">297</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_tnum</tt> </tt>
</div><a name="Bdy3d.get_znum"></a><div id="Bdy3d.get_znum-def"><a name="L298"></a><tt class="py-lineno">298</tt> <a class="py-toggle" href="#" id="Bdy3d.get_znum-toggle" onclick="return toggle('Bdy3d.get_znum');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Bdy3d-class.html#get_znum">get_znum</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Bdy3d.get_znum-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Bdy3d.get_znum-expanded"><a name="L299"></a><tt class="py-lineno">299</tt>  <tt class="py-line">        <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_znum</tt> </tt>
</div><a name="L300"></a><tt class="py-lineno">300</tt>  <tt class="py-line"> </tt>
<a name="L301"></a><tt class="py-lineno">301</tt>  <tt class="py-line">    <tt id="link-104" class="py-name"><a title="octant.getm.Bdy2d.nbdy
octant.getm.Bdy3d.nbdy" class="py-name" href="#" onclick="return doclink('link-104', 'nbdy', 'link-7');">nbdy</a></tt><tt class="py-op">=</tt><tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-105" class="py-name"><a title="octant.getm.Bdy2d.get_nbdy
octant.getm.Bdy3d.get_nbdy" class="py-name" href="#" onclick="return doclink('link-105', 'get_nbdy', 'link-60');">get_nbdy</a></tt><tt class="py-op">,</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-name">doc</tt><tt class="py-op">=</tt><tt class="py-string">"Number of boundary steps"</tt><tt class="py-op">)</tt> </tt>
<a name="L302"></a><tt class="py-lineno">302</tt>  <tt class="py-line">    <tt id="link-106" class="py-name"><a title="octant.getm.Bdy2d.tnum
octant.getm.Bdy3d.tnum" class="py-name" href="#" onclick="return doclink('link-106', 'tnum', 'link-52');">tnum</a></tt><tt class="py-op">=</tt><tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-107" class="py-name"><a title="octant.getm.Bdy2d.get_tnum
octant.getm.Bdy3d.get_tnum" class="py-name" href="#" onclick="return doclink('link-107', 'get_tnum', 'link-62');">get_tnum</a></tt><tt class="py-op">,</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-name">doc</tt><tt class="py-op">=</tt><tt class="py-string">"Number of timesteps"</tt><tt class="py-op">)</tt> </tt>
<a name="L303"></a><tt class="py-lineno">303</tt>  <tt class="py-line">    <tt id="link-108" class="py-name" targets="Variable octant.getm.Bdy3d.znum=octant.getm.Bdy3d-class.html#znum"><a title="octant.getm.Bdy3d.znum" class="py-name" href="#" onclick="return doclink('link-108', 'znum', 'link-108');">znum</a></tt><tt class="py-op">=</tt><tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-109" class="py-name" targets="Method octant.getm.Bdy3d.get_znum()=octant.getm.Bdy3d-class.html#get_znum"><a title="octant.getm.Bdy3d.get_znum" class="py-name" href="#" onclick="return doclink('link-109', 'get_znum', 'link-109');">get_znum</a></tt><tt class="py-op">,</tt><tt class="py-name">None</tt><tt class="py-op">,</tt><tt class="py-name">doc</tt><tt class="py-op">=</tt><tt class="py-string">"Number of z-levels"</tt><tt class="py-op">)</tt> </tt>
</div><a name="L304"></a><tt class="py-lineno">304</tt>  <tt class="py-line"> </tt>
<a name="Transect"></a><div id="Transect-def"><a name="L305"></a><tt class="py-lineno">305</tt> <a class="py-toggle" href="#" id="Transect-toggle" onclick="return toggle('Transect');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="octant.getm.Transect-class.html">Transect</a><tt class="py-op">(</tt><tt class="py-base-class">Transect_extrapolator</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Transect-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Transect-expanded"><a name="L306"></a><tt class="py-lineno">306</tt>  <tt class="py-line">    <tt class="py-docstring">"""</tt> </tt>
<a name="L307"></a><tt class="py-lineno">307</tt>  <tt class="py-line"><tt class="py-docstring">    GETM Transect class</tt> </tt>
<a name="L308"></a><tt class="py-lineno">308</tt>  <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt>  <tt class="py-line"><tt class="py-docstring">    Creates a transect object out of a GETM output</tt> </tt>
<a name="L310"></a><tt class="py-lineno">310</tt>  <tt class="py-line"><tt class="py-docstring">    netcdf file and a list of lon/lat tuples.</tt> </tt>
<a name="L311"></a><tt class="py-lineno">311</tt>  <tt class="py-line"><tt class="py-docstring">    """</tt> </tt>
<a name="Transect.__init__"></a><div id="Transect.__init__-def"><a name="L312"></a><tt class="py-lineno">312</tt> <a class="py-toggle" href="#" id="Transect.__init__-toggle" onclick="return toggle('Transect.__init__');">-</a><tt class="py-line">    <tt class="py-keyword">def</tt> <a class="py-def-name" href="octant.getm.Transect-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">ncgrid</tt><tt class="py-op">,</tt> <tt class="py-param">verts</tt><tt class="py-op">,</tt> <tt class="py-param">proj</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Transect.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Transect.__init__-expanded"><a name="L313"></a><tt class="py-lineno">313</tt>  <tt class="py-line">         </tt>
<a name="L314"></a><tt class="py-lineno">314</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">proj</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L315"></a><tt class="py-lineno">315</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">proj</tt> <tt class="py-op">=</tt> <tt class="py-name">Basemap</tt><tt class="py-op">(</tt><tt class="py-name">projection</tt><tt class="py-op">=</tt><tt class="py-string">'merc'</tt><tt class="py-op">,</tt> <tt class="py-name">resolution</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-name">lat_ts</tt><tt class="py-op">=</tt><tt class="py-number">0.0</tt><tt class="py-op">)</tt> </tt>
<a name="L316"></a><tt class="py-lineno">316</tt>  <tt class="py-line">        <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L317"></a><tt class="py-lineno">317</tt>  <tt class="py-line">            <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">proj</tt> <tt class="py-op">=</tt> <tt class="py-name">proj</tt> </tt>
<a name="L318"></a><tt class="py-lineno">318</tt>  <tt class="py-line">         </tt>
<a name="L319"></a><tt class="py-lineno">319</tt>  <tt class="py-line">        <tt class="py-name">nc</tt> <tt class="py-op">=</tt> <tt class="py-name">netCDF4</tt><tt class="py-op">.</tt><tt id="link-110" class="py-name"><a title="octant.io.Dataset" class="py-name" href="#" onclick="return doclink('link-110', 'Dataset', 'link-24');">Dataset</a></tt><tt class="py-op">(</tt><tt class="py-name">ncgrid</tt><tt class="py-op">)</tt> </tt>
<a name="L320"></a><tt class="py-lineno">320</tt>  <tt class="py-line">        <tt class="py-name">gridtype</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'grid_type'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L321"></a><tt class="py-lineno">321</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">gridtype</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
<a name="L322"></a><tt class="py-lineno">322</tt>  <tt class="py-line">            <tt id="link-111" class="py-name" targets="Variable octant.grid.CGrid_geo.lat=octant.grid.CGrid_geo-class.html#lat"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-111', 'lat', 'link-111');">lat</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'lat'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L323"></a><tt class="py-lineno">323</tt>  <tt class="py-line">            <tt id="link-112" class="py-name" targets="Variable octant.grid.CGrid_geo.lon=octant.grid.CGrid_geo-class.html#lon"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-112', 'lon', 'link-112');">lon</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'lon'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L324"></a><tt class="py-lineno">324</tt>  <tt class="py-line">            <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'bathymetry'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L325"></a><tt class="py-lineno">325</tt>  <tt class="py-line">            <tt id="link-113" class="py-name" targets="Variable octant.grid.CGrid.mask=octant.grid.CGrid-class.html#mask"><a title="octant.grid.CGrid.mask" class="py-name" href="#" onclick="return doclink('link-113', 'mask', 'link-113');">mask</a></tt> <tt class="py-op">=</tt> <tt class="py-name">h</tt> <tt class="py-op">==</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'bathymetry'</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">missing_value</tt> </tt>
<a name="L326"></a><tt class="py-lineno">326</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">gridtype</tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
<a name="L327"></a><tt class="py-lineno">327</tt>  <tt class="py-line">            <tt id="link-114" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-114', 'lat', 'link-111');">lat</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'latx'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L328"></a><tt class="py-lineno">328</tt>  <tt class="py-line">            <tt id="link-115" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-115', 'lon', 'link-112');">lon</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'lonx'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L329"></a><tt class="py-lineno">329</tt>  <tt class="py-line">            <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'bathymetry'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L330"></a><tt class="py-lineno">330</tt>  <tt class="py-line">            <tt id="link-116" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-116', 'lat', 'link-111');">lat</a></tt><tt class="py-op">=</tt><tt id="link-117" class="py-name"><a title="octant.tools.shrink" class="py-name" href="#" onclick="return doclink('link-117', 'shrink', 'link-3');">shrink</a></tt><tt class="py-op">(</tt><tt id="link-118" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-118', 'lat', 'link-111');">lat</a></tt><tt class="py-op">,</tt><tt class="py-name">h</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
<a name="L331"></a><tt class="py-lineno">331</tt>  <tt class="py-line">            <tt id="link-119" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-119', 'lon', 'link-112');">lon</a></tt><tt class="py-op">=</tt><tt id="link-120" class="py-name"><a title="octant.tools.shrink" class="py-name" href="#" onclick="return doclink('link-120', 'shrink', 'link-3');">shrink</a></tt><tt class="py-op">(</tt><tt id="link-121" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-121', 'lon', 'link-112');">lon</a></tt><tt class="py-op">,</tt><tt class="py-name">h</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
<a name="L332"></a><tt class="py-lineno">332</tt>  <tt class="py-line">            <tt id="link-122" class="py-name"><a title="octant.grid.CGrid.mask" class="py-name" href="#" onclick="return doclink('link-122', 'mask', 'link-113');">mask</a></tt> <tt class="py-op">=</tt> <tt class="py-name">h</tt> <tt class="py-op">==</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'bathymetry'</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">missing_value</tt> </tt>
<a name="L333"></a><tt class="py-lineno">333</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">gridtype</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
<a name="L334"></a><tt class="py-lineno">334</tt>  <tt class="py-line">            <tt id="link-123" class="py-name" targets="Variable octant.grid.BoundaryInteractor.x=octant.grid.BoundaryInteractor-class.html#x,Variable octant.grid.CGrid.x=octant.grid.CGrid-class.html#x"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-123', 'x', 'link-123');">x</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'xc'</tt><tt class="py-op">]</tt> </tt>
<a name="L335"></a><tt class="py-lineno">335</tt>  <tt class="py-line">            <tt id="link-124" class="py-name" targets="Variable octant.grid.BoundaryInteractor.y=octant.grid.BoundaryInteractor-class.html#y,Variable octant.grid.CGrid.y=octant.grid.CGrid-class.html#y"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-124', 'y', 'link-124');">y</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'yc'</tt><tt class="py-op">]</tt> </tt>
<a name="L336"></a><tt class="py-lineno">336</tt>  <tt class="py-line">            <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'bathymetry'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L337"></a><tt class="py-lineno">337</tt>  <tt class="py-line">            <tt id="link-125" class="py-name"><a title="octant.grid.CGrid.mask" class="py-name" href="#" onclick="return doclink('link-125', 'mask', 'link-113');">mask</a></tt> <tt class="py-op">=</tt> <tt class="py-name">h</tt> <tt class="py-op">==</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'bathymetry'</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">missing_value</tt> </tt>
<a name="L338"></a><tt class="py-lineno">338</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">gridtype</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L339"></a><tt class="py-lineno">339</tt>  <tt class="py-line">            <tt id="link-126" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-126', 'x', 'link-123');">x</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'xx'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L340"></a><tt class="py-lineno">340</tt>  <tt class="py-line">            <tt id="link-127" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-127', 'y', 'link-124');">y</a></tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'yx'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L341"></a><tt class="py-lineno">341</tt>  <tt class="py-line">            <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'bathymetry'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
<a name="L342"></a><tt class="py-lineno">342</tt>  <tt class="py-line">            <tt id="link-128" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-128', 'x', 'link-123');">x</a></tt><tt class="py-op">=</tt><tt id="link-129" class="py-name"><a title="octant.tools.shrink" class="py-name" href="#" onclick="return doclink('link-129', 'shrink', 'link-3');">shrink</a></tt><tt class="py-op">(</tt><tt id="link-130" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-130', 'x', 'link-123');">x</a></tt><tt class="py-op">,</tt><tt class="py-name">h</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
<a name="L343"></a><tt class="py-lineno">343</tt>  <tt class="py-line">            <tt id="link-131" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-131', 'y', 'link-124');">y</a></tt><tt class="py-op">=</tt><tt id="link-132" class="py-name"><a title="octant.tools.shrink" class="py-name" href="#" onclick="return doclink('link-132', 'shrink', 'link-3');">shrink</a></tt><tt class="py-op">(</tt><tt id="link-133" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-133', 'y', 'link-124');">y</a></tt><tt class="py-op">,</tt><tt class="py-name">h</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
<a name="L344"></a><tt class="py-lineno">344</tt>  <tt class="py-line">            <tt id="link-134" class="py-name"><a title="octant.grid.CGrid.mask" class="py-name" href="#" onclick="return doclink('link-134', 'mask', 'link-113');">mask</a></tt> <tt class="py-op">=</tt> <tt class="py-name">h</tt> <tt class="py-op">==</tt> <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt class="py-name">variables</tt><tt class="py-op">[</tt><tt class="py-string">'bathymetry'</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">missing_value</tt> </tt>
<a name="L345"></a><tt class="py-lineno">345</tt>  <tt class="py-line">        <tt class="py-name">nc</tt><tt class="py-op">.</tt><tt id="link-135" class="py-name"><a title="octant.extern.pupynere.NetCDFFile.close
octant.getm.Bdy2d.close
octant.getm.Bdy3d.close" class="py-name" href="#" onclick="return doclink('link-135', 'close', 'link-13');">close</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L346"></a><tt class="py-lineno">346</tt>  <tt class="py-line">         </tt>
<a name="L347"></a><tt class="py-lineno">347</tt>  <tt class="py-line">        <tt class="py-keyword">if</tt> <tt class="py-name">gridtype</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt> <tt class="py-keyword">or</tt> <tt class="py-name">gridtype</tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
<a name="L348"></a><tt class="py-lineno">348</tt>  <tt class="py-line">            <tt class="py-op">(</tt><tt class="py-name">lonm</tt><tt class="py-op">,</tt><tt class="py-name">latm</tt><tt class="py-op">)</tt><tt class="py-op">=</tt><tt class="py-name">pylab</tt><tt class="py-op">.</tt><tt class="py-name">meshgrid</tt><tt class="py-op">(</tt><tt id="link-136" class="py-name"><a title="octant.grid.CGrid_geo.lon" class="py-name" href="#" onclick="return doclink('link-136', 'lon', 'link-112');">lon</a></tt><tt class="py-op">,</tt><tt id="link-137" class="py-name"><a title="octant.grid.CGrid_geo.lat" class="py-name" href="#" onclick="return doclink('link-137', 'lat', 'link-111');">lat</a></tt><tt class="py-op">)</tt> </tt>
<a name="L349"></a><tt class="py-lineno">349</tt>  <tt class="py-line">            <tt id="link-138" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-138', 'x', 'link-123');">x</a></tt><tt class="py-op">,</tt> <tt id="link-139" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-139', 'y', 'link-124');">y</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">proj</tt><tt class="py-op">(</tt><tt class="py-name">lonm</tt><tt class="py-op">[</tt><tt class="py-op">~</tt><tt id="link-140" class="py-name"><a title="octant.grid.CGrid.mask" class="py-name" href="#" onclick="return doclink('link-140', 'mask', 'link-113');">mask</a></tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">latm</tt><tt class="py-op">[</tt><tt class="py-op">~</tt><tt id="link-141" class="py-name"><a title="octant.grid.CGrid.mask" class="py-name" href="#" onclick="return doclink('link-141', 'mask', 'link-113');">mask</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L350"></a><tt class="py-lineno">350</tt>  <tt class="py-line">            <tt class="py-name">lonv</tt><tt class="py-op">,</tt> <tt class="py-name">latv</tt> <tt class="py-op">=</tt> <tt class="py-name">zip</tt><tt class="py-op">(</tt><tt class="py-op">*</tt><tt id="link-142" class="py-name" targets="Variable octant.grid.BoundaryInteractor.verts=octant.grid.BoundaryInteractor-class.html#verts"><a title="octant.grid.BoundaryInteractor.verts" class="py-name" href="#" onclick="return doclink('link-142', 'verts', 'link-142');">verts</a></tt><tt class="py-op">)</tt> </tt>
<a name="L351"></a><tt class="py-lineno">351</tt>  <tt class="py-line">            <tt class="py-name">xv</tt><tt class="py-op">,</tt> <tt class="py-name">yv</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">proj</tt><tt class="py-op">(</tt><tt class="py-name">lonv</tt><tt class="py-op">,</tt> <tt class="py-name">latv</tt><tt class="py-op">)</tt> </tt>
<a name="L352"></a><tt class="py-lineno">352</tt>  <tt class="py-line">        <tt class="py-keyword">elif</tt> <tt class="py-name">gridtype</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt> <tt class="py-keyword">or</tt> <tt class="py-name">gridtype</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
<a name="L353"></a><tt class="py-lineno">353</tt>  <tt class="py-line">            <tt class="py-op">(</tt><tt id="link-143" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-143', 'x', 'link-123');">x</a></tt><tt class="py-op">,</tt><tt id="link-144" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-144', 'y', 'link-124');">y</a></tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-name">pl</tt><tt class="py-op">.</tt><tt class="py-name">meshgrid</tt><tt class="py-op">(</tt><tt id="link-145" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-145', 'x', 'link-123');">x</a></tt><tt class="py-op">,</tt><tt id="link-146" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-146', 'y', 'link-124');">y</a></tt><tt class="py-op">)</tt> </tt>
<a name="L354"></a><tt class="py-lineno">354</tt>  <tt class="py-line">            <tt class="py-name">xv</tt><tt class="py-op">,</tt><tt class="py-name">yv</tt> <tt class="py-op">=</tt> <tt class="py-name">zip</tt><tt class="py-op">(</tt><tt class="py-op">*</tt><tt id="link-147" class="py-name"><a title="octant.grid.BoundaryInteractor.verts" class="py-name" href="#" onclick="return doclink('link-147', 'verts', 'link-142');">verts</a></tt><tt class="py-op">)</tt> </tt>
<a name="L355"></a><tt class="py-lineno">355</tt>  <tt class="py-line">              </tt>
<a name="L356"></a><tt class="py-lineno">356</tt>  <tt class="py-line">        <tt id="link-148" class="py-name"><a title="octant.grid.BoundaryInteractor.verts" class="py-name" href="#" onclick="return doclink('link-148', 'verts', 'link-142');">verts</a></tt> <tt class="py-op">=</tt> <tt class="py-name">zip</tt><tt class="py-op">(</tt><tt class="py-name">xv</tt><tt class="py-op">,</tt> <tt class="py-name">yv</tt><tt class="py-op">)</tt> </tt>
<a name="L357"></a><tt class="py-lineno">357</tt>  <tt class="py-line">         </tt>
<a name="L358"></a><tt class="py-lineno">358</tt>  <tt class="py-line">        <tt class="py-name">super</tt><tt class="py-op">(</tt><tt id="link-149" class="py-name" targets="Class octant.getm.Transect=octant.getm.Transect-class.html"><a title="octant.getm.Transect" class="py-name" href="#" onclick="return doclink('link-149', 'Transect', 'link-149');">Transect</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-150" class="py-name" targets="Method octant.depths.s_coordinate.__init__()=octant.depths.s_coordinate-class.html#__init__,Method octant.extern.greatcircle.GreatCircle.__init__()=octant.extern.greatcircle.GreatCircle-class.html#__init__,Method octant.extern.kdtree.KDTree.__init__()=octant.extern.kdtree.KDTree-class.html#__init__,Method octant.extern.kdtree.KDTree.innernode.__init__()=octant.extern.kdtree.KDTree.innernode-class.html#__init__,Method octant.extern.kdtree.KDTree.leafnode.__init__()=octant.extern.kdtree.KDTree.leafnode-class.html#__init__,Method octant.extern.kdtree.Rectangle.__init__()=octant.extern.kdtree.Rectangle-class.html#__init__,Method octant.extern.pupynere.NetCDFFile.__init__()=octant.extern.pupynere.NetCDFFile-class.html#__init__,Method octant.extern.pupynere.NetCDFVariable.__init__()=octant.extern.pupynere.NetCDFVariable-class.html#__init__,Method octant.getm.Bdy2d.__init__()=octant.getm.Bdy2d-class.html#__init__,Method octant.getm.Bdy3d.__init__()=octant.getm.Bdy3d-class.html#__init__,Method octant.getm.Bdyinfo.__init__()=octant.getm.Bdyinfo-class.html#__init__,Method octant.getm.Transect.__init__()=octant.getm.Transect-class.html#__init__,Method octant.grid.BoundaryInteractor.__init__()=octant.grid.BoundaryInteractor-class.html#__init__,Method octant.grid.CGrid.__init__()=octant.grid.CGrid-class.html#__init__,Method octant.grid.CGrid_geo.__init__()=octant.grid.CGrid_geo-class.html#__init__,Method octant.grid.Focus.__init__()=octant.grid.Focus-class.html#__init__,Method octant.grid.Gridgen.__init__()=octant.grid.Gridgen-class.html#__init__,Method octant.grid.edit_mask_mesh.__init__()=octant.grid.edit_mask_mesh-class.html#__init__,Method octant.ocean.depths.Depths.__init__()=octant.ocean.depths.Depths-class.html#__init__,Method octant.ocean.step3d_t.Step3d_t.__init__()=octant.ocean.step3d_t.Step3d_t-class.html#__init__,Method octant.ocean.velocity.nc_velocity.__init__()=octant.ocean.velocity.nc_velocity-class.html#__init__,Method octant.roms.nc_N2.__init__()=octant.roms.nc_N2-class.html#__init__,Method octant.roms.nc_depths.__init__()=octant.roms.nc_depths-class.html#__init__,Method octant.tools.Transect_extrapolator.__init__()=octant.tools.Transect_extrapolator-class.html#__init__"><a title="octant.depths.s_coordinate.__init__
octant.extern.greatcircle.GreatCircle.__init__
octant.extern.kdtree.KDTree.__init__
octant.extern.kdtree.KDTree.innernode.__init__
octant.extern.kdtree.KDTree.leafnode.__init__
octant.extern.kdtree.Rectangle.__init__
octant.extern.pupynere.NetCDFFile.__init__
octant.extern.pupynere.NetCDFVariable.__init__
octant.getm.Bdy2d.__init__
octant.getm.Bdy3d.__init__
octant.getm.Bdyinfo.__init__
octant.getm.Transect.__init__
octant.grid.BoundaryInteractor.__init__
octant.grid.CGrid.__init__
octant.grid.CGrid_geo.__init__
octant.grid.Focus.__init__
octant.grid.Gridgen.__init__
octant.grid.edit_mask_mesh.__init__
octant.ocean.depths.Depths.__init__
octant.ocean.step3d_t.Step3d_t.__init__
octant.ocean.velocity.nc_velocity.__init__
octant.roms.nc_N2.__init__
octant.roms.nc_depths.__init__
octant.tools.Transect_extrapolator.__init__" class="py-name" href="#" onclick="return doclink('link-150', '__init__', 'link-150');">__init__</a></tt><tt class="py-op">(</tt><tt id="link-151" class="py-name"><a title="octant.grid.BoundaryInteractor.x
octant.grid.CGrid.x" class="py-name" href="#" onclick="return doclink('link-151', 'x', 'link-123');">x</a></tt><tt class="py-op">,</tt> <tt id="link-152" class="py-name"><a title="octant.grid.BoundaryInteractor.y
octant.grid.CGrid.y" class="py-name" href="#" onclick="return doclink('link-152', 'y', 'link-124');">y</a></tt><tt class="py-op">,</tt> <tt id="link-153" class="py-name"><a title="octant.grid.BoundaryInteractor.verts" class="py-name" href="#" onclick="return doclink('link-153', 'verts', 'link-142');">verts</a></tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L359"></a><tt class="py-lineno">359</tt>  <tt class="py-line"> </tt><script type="text/javascript">
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